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Course Organisers: Dr Ivana Drobnjak, Constantinos Timinis

AIMS AND OBJECTIVESUnderstanding and forming an accurate opinion of a journal article is a crucial skill for research; the CDT’s flagship journal club course aims to equip students with the skills necessary to carry out a critical review of literature relevant to their field.

Students will work together through group work and discussion to develop skills for critical thinking and reviewing, and understand the motivation for paper writing whilst developing academic presentation skills.

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ASSESSMENT AND FEEDBACK

Students will be assessed through terms 1-3 in three categories:

Individual Paper Review:ÌýStudents will be asked to submit a written review of one of the papers after the last presentation of the Journal Club. The review should summarise the paper and reflect upon contemporary literature. In the case of older papers, it is expected that some discussion of their subsequent impact should be present. The review should not exceed 1000 words. Two example written reviews are available here and here.
Class Contribution (throughout the year):ÌýStudents will be expected to contribute to the class throughout the year by raising questions, contributing to the discussion and voicing opinions. Attendance will form a component of class contribution.
Presentation Skills:ÌýEach student will present three times during the rotation, once as lead presented and once each presenting the contributions and limitations of the paper. Students will be assessed on each presentation. Students will be assessed on their general presentation skills, strength of conclusions and ability to handle questions.

CLASS STRUCTURE

In 2019-2020Ìýthe CDT MRes students, each week in rotation, will present a paper chosen by an academic member of staff who will then chair the session. The format will be a 15 minute presentation by the lead presenter describing the aims and motivation for the work the methodology and the results. After group-based discussion of these sections, this will be followed by two further short presentations by two members of the group which will describe in detail the contributions and limitations of the paper. This will be followed by discussion on these sections and on the impact of the paper. The academic chairperson will choose the paper in advance and will be there to help guide the discussion. Written reviews will be due in approximately half-way through the course and at the end of the student rotation.

The sessions are likely to last for at leastÌý90 minutesÌýwith discussion.

Students will be divided into groups. One group will present the paper of that week, otherwise each group will be assigned one of the themes below:

Aims & Motivation: What problem does this paper solve? Why has no one provided a solution before? Is sufficient background literature given to understand the problem? Experimental Design: Are the descriptions of the method, data and design sufficient to reasonably recreate the work? Supporting Results: Do the results follow from the methodology? are they sufficient? Are there superfluous results? Paper Limitations: Do the conclusions follow from the results or are they overstated? What limitations are present, do they undermine the results and conclusions? Paper Contributions: What does the paper add to the existing body of literature? Outcome & Impact: What impact has the paper made (citations, software, hardware, methods)? Is the paper likely to make a substantial impact in its field?

CURRENT SYLLABUS 2019-20

Unless otherwise stated, the CDT Journal Club will be held on Wednesdays in MPEB 1.19 between 2-4pm.

First Rotation

2nd October 2019:ÌýWelcome to the CDT Journal Club: Understanding Journal Publications, Aims & Structure [pdf]

9th October 2019:ÌýPresenting at Journal Club [pdf]

16th October 2019:ÌýPersonal Presentations

23rd October 2019:ÌýLeading a Journal Club discussion [pdf]

Second Rotation

30th October 2019:ÌýÌýLed byÌýCatarina Isabel Correia Veloso Da Veiga - []

6th November 2019:ÌýLed by Tammy Kalber - []

13th November 2019:ÌýLed by Matt Clarkson - []

20th November 2019:ÌýLed byÌýKarin Shmueli - []

Term 1

27th November 2019:ÌýNo session this week.

4th December 2019:ÌýLed by Andrew Melbourne - []

11th December 2019:ÌýLed byÌýJamie McClelland - []

18th December 2019:ÌýNo session this week.

Term 2

8th January 2020:ÌýNo session this week.

15th January 2020:ÌýLed by Geoff ParkerÌý- []

22nd January 2020:ÌýLed by Clare Elwell - []

29th January 2020:ÌýLed by Ilias Tachtsidis - []

5th February 2020 (2-3pm):ÌýLed by Anna David - []

12th February 2020:ÌýLed byÌýSjoerd VosÌý- []

19th February 2020:ÌýNo session this week.

26th February 2020:ÌýLed by James GuggenheimÌý- []

4th March 2020:ÌýLed by Youngjun Cho - []

11th March 2020:ÌýLed by Gary Zhang - []

20th May 2020 (2:30pm): - Led by Gary Zhang

3rd June 2020: Led by Marco Palombo - []

10th JuneÌý2020: Led byÌýJon Claydon - []

* Deadline for the written review:Ìý17th June 2pm

VJOURNAL CLUB SYLLABUS 2018-19 (ARCHIVE)

First Rotation

3rd October 2018:ÌýWelcome to the CDT Journal Club: Understanding Journal Publication

10th October 2018:ÌýUnderstanding Paper Structure and Paper Reading Exercise.

17th October 2018:ÌýClass structure and introductory presentations.

Term 1

24th October 2018:ÌýNo session this week.

31st October 2018:ÌýÌý. Led by Matt Clarkson.

7th November 2018:ÌýÌý. Led by Adrien Desjardins.

14th November 2018:Ìý. Led by Danny Alexander.

21st November 2018:Ìý. Led by David Atkinson.

28th November 2018:ÌýÌýLed by Jamie McClelland.

5th December 2018:ÌýÌý. Led by Sandro Olivo.

12th December 2018:Ìý. Led by Joseph Jacob. Session starts at 14:15.

19th December 2018:ÌýNo session this week.

Term 2

9th January 2019:Ìý. Led by Gary Zhang.

16th January 2019:Ìý. Led by Jem Hebden.

23rd January 2019:Ìý. Led by Clare Elwell.

30rd January 2019:Ìý. Led by Ryo Torii.

06th February 2019:Ìý. Led by Anna Barnes.

13th February 2019:ÌýNo session this week.

20th February 2019:ÌýNo session this week.

27th February 2019:Ìý. Led by Kris Thielemans.

06th March 2019:Ìý. Led by Marco Endrizzi.

Deadline for the written review:Ìý12th April 2019
Feedback session:Ìý22th May 2019 (14:00-16:00)

JOURNAL CLUB SYLLABUS 2017-18 (ARCHIVE)

First Rotation

4th October 2017:ÌýWelcome to the CDT Journal Club: Understanding Journal Publication

11th October 2017:ÌýUnderstanding Paper Structure and Paper Reading Exercise.

18th October 2017:ÌýClass structure and introductory presentations.

25th October 2017:ÌýPractice session with previous students.

Term 1

1st November 2017:ÌýÌýLed by Ivana Drobnjak.ÌýFirst official session.

8th November 2017:ÌýÌý. Led by Matt Clarkson.

15th November 2017:Ìý. Led by Eugenio Iglesias.

22th November 2017:Ìý. Led by Tom Vercauteren.

29th November 2017:ÌýÌý. Led by Adrien Desjardins.ÌýThis session will start at 1.30pm in MPEB 1.03.

6th December 2017:Ìý. Led by Gary Zhang.

13th December 2017:Ìý. Led by Christos Bergeles.

20th December 2017:ÌýNo Session.

Term 2

10th January 2018:Ìý. Led by Sebastien Ourselin.

17th January 2018:Ìý. Led by David Atkinson..

24th January 2017:ÌýÌýSee alsoÌý. Led by Sandro Olivo.

31st January 2018:Ìý. Led by Jem Hebden.

7th February 2018:Ìý. Led by David Thomas.

14th February 2018:ÌýNo Session this week.

21st February 2018:Ìý. Led by Brian Hutton.

28th February 2018:ÌýSession Postponed.

6th March 2018:Ìý. Led by Anna David.ÌýExceptionally this session is on Tuesday 20th 12-1.30pm in MPEB 1.19.

7th March 2018:Ìý. Lead by Andrew Melbourne

14th March 2018:ÌýNo Session this week

21st March 2018:Ìý. Led by Andre Altmann.

18th April 2018:Ìý. Led by Clare Elwell.ÌýStarting at 3pm.

24th April 2018:Ìý. Lead by Rachel Sparks. To be held inÌýMPEB 1.19 3pm.

25th April 2018:Ìý. Led by Ilias Tachtsidis.

JOURNAL CLUB SYLLABUS 2016-17 (ARCHIVE)

First Rotation

5th October 2016:ÌýWelcome to the CDT Journal Club.

12th October 2016:ÌýClass structure and introductory presentations.

19th October 2016:ÌýPractice session with previous students.

26th October 2016:Ìý. Led by Eugenio Iglesias.

2nd November 2016:Ìý. Led by Gary Zhang.

9th November 2016:Ìý. Led by Danny Alexander.ÌýTo be held in 1.20 MPEB.

16th November 2016:Ìý. Led by Christos Bergeles.

23rd November 2016:Ìý. Led by Ivana Drobnjak.

30th November 2016:Ìý. Led by Sebastien Ourselin.

7th December 2016:ÌýSession postponed.

14th December 2016:Ìý. Led by Tammy Kalber.

21st December 2016:ÌýFirst Written Review Deadline.

Term 2

11th January 2017:Ìý. Led by Tom Vercauteren.

18th January 2017:Ìý. Led by Clare Elwell.ÌýStarting at 1.30pm in MPEB 2.14.

25th January 2017:Ìý. For background see alsoÌý. Led by Sandro Olivo.

1st February 2017:ÌýSession Postponed until March

8th February 2017:Ìý. Led by Jem Hebden.ÌýStarting at 3pm

15th February 2017:ÌýNo session this week.

22nd February 2017:Ìý. Led by David Thomas.

1st March 2017:Ìý. Led by John Ashburner.

8th March 2017:Ìý. Led by David Atkinson.

15th March 2017:Ìý. Led by Karin Shmueli.ÌýTo be held in Roberts 422.

26th April 2017:Ìý. Led by Adrien Desjardins

4th May 2017:ÌýSecond Written Review Deadline 5pm.

May 2017:ÌýFinal Feedback Session.

JOURNAL CLUB SYLLABUS 2015-16 (ARCHIVE)

First Rotation

14th October 2015: Welcome to the CDT Journal Club.
21st October 2015: Presentation and Discussion Practice Session.
1. 28th October 2015: Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging, Behrens et al, Nature Neuroscience Vol 6 750-757 2003. Lead by Danny Alexander. See also Behrens 2003..
2. 4th November 2015: A positive-negative mode of population covariation links brain connectivity, demographics and behavior. Stephen M Smith et al. nature neuroscience advance online publication. Lead by Andre Altmann.
3. 11th November 2015: Automatic classification of MR scans in Alzheimer’s disease, Stefan Kloppel et al. Brain (2008), 131, 681-689. Lead by Sebastien Ourselin. Starting at 2.30pm.
4. 18th November 2015: Magnetic resonance fingerprinting, Dan Ma et al, Nature 495, 187–192 (14 March 2013). Lead by David Atkinson.
5. 25th November 2015: Functional near infrared spectroscopy (fNIRS) to assess cognitive function in infants in rural Africa. Lloyd-Fox S et al, Sci Rep. 2014 Apr 22;4:4740. Lead by Clare Elwell. Starting at 3pm.
6. 2nd December 2015: KinectFusion: Real-Time Dense Surface Mapping and Tracking, Richard A. Newcombe et al. IEEE ISMAR, 2011. Lead by Christos Bergeles. Starting at 3pm.
7. 9th December 2015: Stable Signal Recovery from Incomplete and Inaccurate Measurements. Candes E., Romberg J. and Tao T. Communications on Pure and Applied Mathematics, Vol. LIX, 1207–1223 (2006). Lead by Simon Arridge. See also the exercise provided here..
8. 16th December 2015: Gradient-based enhancement of tubular structures in medical images. Rodrigo Moreno and Örjan Smedby, Medical Image Analysis Volume 26, Issue 1, December 2015, Pages 19–29. Lead by Dean Barratt.
9. 13th January 2016: Modeling dendrite density from magnetic resonance diffusion measurements. Jespersen SN et al. Neuroimage. 2007 Feb 15;34(4):1473-86. Lead by Gary Zhang.
10. 20th January 2016: Automatic CT-ultrasound registration for diagnostic imaging and image-guided intervention. Wein, W., et al. (2008). Medical Image Analysis, 12(5), 577–85. Lead by Tom Vercauteren.
11. 27th January 2016: Intra-arterial catheter for simultaneous microstructural and molecular imaging in vivo. Hongki Yoo et al VOLUME 17, NUMBER 12, DECEMBER 2011 nature medicine. Lead by Adrien Desjardins.

Second Rotation

12. 3rd February 2016: Brain-wide pathway for waste clearance captured by contrast-enhanced MRI. Jeffrey J. Iliff et al. The Journal of Clinical Investigation, Volume 123, Number, 2013 1299-1309. Lead by Mark Lythgoe.
13. 10th February 2016: MRI simulation-based evaluation of image-processing and classification methods, Kwan R.K. et al IEEE Transactions on Medical Imaging. 18(11):1085-97, Nov 1999. Lead by Ivana Drobnjak.
14. 17th February 2016: Real-time ultrasound transducer localization in fluoroscopy images by transfer learning from synthetic training data. Tobias Heimann et al, Medical Image Analysis, Volume 18, Issue 8, 2014, Pages 1320–1328. Lead by Dan Stoyanov.
15. 24th February 2016: Go-ICP: A Globally Optimal Solution to 3D ICP Point-Set Registration. Yang et al, Pattern Analysis and Machine Intelligence, IEEE Transactions on (Volume:PP Issue 99). Lead by Matt Clarkson.
16. 2nd March 2016: High-field MRI of brain cortical substructure based on signal phase.
Duyn JH et al, Proc Natl Acad Sci U S A. 2007 Jul 10;104(28):11796-801. See also Shmueli et al 2009. Lead by Karin Shmueli.
17. 9th March 2016: White, B.R. and Culver, J.P. (2010) Phase-encoded retinotopy as an evaluation of diffuse optical neuroimaging. NeuroImage 49, 568-577. Lead by Jem Hebden.
18. 16th March 2016: Hoge RD et al. Linear coupling between cerebral blood flow and oxygen consumption in activated human cortex. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9403-8. Lead by David Thomas. To be held in the Front Engineering Building 1.03.
19. 23rd March 2016: Imaging brain deoxyglucose uptake and metabolism by glucoCEST MRI. Nasrallah F.A. et al. J Cereb Blood Flow Metab. 2013 Aug;33(8):1270-8. Lead by Xavier Golay.
20. 13th April 2016: Petibon Y et al. Towards coronary plaque imaging using simultaneous PET-MR: a simulation study. Phys Med Biol 2014; 59: 1203-22. See also Joshi et al 2014. Lead by Brian Hutton.
22. 29th April 2016: Ultrasonographically detectable markers of fetal chromosomal abnormalities. Nicolaides KH et al, Lancet, 340:8821, 704-707 1992. Lead by Anna David. To be held on a Friday between 1-2.30pm.

JOURNAL CLUB SYLLABUS 2014-15 (ARCHIVE)

First Rotation
1st October 2014: Welcome to the DTP Journal Club.
8th October 2014: Presentation session.
1. 15th October 2014: Modeling dendrite density from magnetic resonance diffusion measurements. Jespersen SN et al. Neuroimage. 2007 Feb 15;34(4):1473-86. Lead by Gary Zhang.
2. 22nd October 2014: Log-Euclidean Metrics for Fast and Simple Calculus on Diffusion Tensors Magnetic Resonance in Medicine V. Arsigny et al, 56:411–421 (2006). Lead by Tom Vercauteren.
3. 29th October 2014: Automatic classification of MR scans in Alzheimer’s disease, Stefan Kloppel et al. Brain (2008), 131, 681-689. Lead by Sebastien Ourselin. 3-4.30pm in MPEB 1.19.
4. 5th November 2014: Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging, Behrens et al, Nature Neuroscience Vol 6 750-757 2003. Lead by Danny Alexander. See also Behrens 2003.
5. 12th November 2014: Session Postponed until January.
6. 19th November 2014: A Framework for the Volumetric Integration of Depth Images, Prisacariu, V.A. et al, ArXiv e-prints 1410.0925, 2014. Lead by Dan Stoyanov.
7. 26th November 2014: High-field MRI of brain cortical substructure based on signal phase. Jeff H. Duyn† et al, PNAS, 104, 28, 11796–11801, 2007. See also Liu et al 2014 for a review of SWI. Lead by Karin Shmueli.
8. 3rd December 2014: Magnetic resonance fingerprinting, Dan Ma et al, Nature 495, 187–192 (14 March 2013). Lead by David Atkinson.
9. 10th December 2014: Nonrigid registration using free-form deformations: application to breast MR images, D. Rueckert et al, IEEE Transactions on Medical Imaging 18:8, 712-721, 1999. Lead by Dave Hawkes. 2.30-4pm in MPEB 1.19.
14th January 2015: No session this week.
5. 21st January 2015: AxCaliber: a method for measuring axon diameter distribution from diffusion MRI. Assaf Y et al, Magn Reson Med. 2008 Jun;59(6):1347-54. Lead by Ivana Drobnjak.
28th January 2015: No session this week.
10. 4th February 2015: Stable Signal Recovery from Incomplete and Inaccurate Measurements. Candes E., Romberg J. and Tao T. Communications on Pure and Applied Mathematics, Vol. LIX, 1207–1223 (2006). Lead by Simon Arridge. See also the exercise provided here.
11. 11th February 2015: White, B.R. and Culver, J.P. (2010) Phase-encoded retinotopy as an evaluation of diffuse optical neuroimaging. NeuroImage 49, 568-577. Lead by Jem Hebden.

Second Rotation
12. 18th February 2015: Using the amide proton signals of intracellular proteins and peptides to detect pH effects in MRI. Jinyuan Zhou et al, Nature Medicine 9, 1085-1090 (2003). Lead by Xavier Golay
20th February 2015: First Written Review Due in.
13. 25th February 2015: Hoge RD et al. Linear coupling between cerebral blood flow and oxygen consumption in activated human cortex. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9403-8. Lead by David Thomas.
14. 4th March 2015: [18F]T807, a novel tau positron emission tomography imaging agent, Chun-Fang Xia et al, Alzheimer’s & Dementia. Volume 9, Issue 6, November 2013, Pages 666–676. Lead by Erik Arstad.
11th March 2015: No session this week.
15. 18th March 2015: Petibon Y et al. Towards coronary plaque imaging using simultaneous PET-MR: a simulation study. Phys Med Biol 2014; 59: 1203-22. See also Joshi et al 2014. Lead by Brian Hutton. To be held in Cruciform B404 – LT2.
16. 25th March 2015: Intra-arterial catheter for simultaneous microstructural and molecular imaging in vivo. Hongki Yoo et al VOLUME 17, NUMBER 12, DECEMBER 2011 nature medicine. Lead by Adrien Desjardins.

17. 15th April 2015: Gleaning Multicomponent T1 and T2 Information From Steady-State Imaging Data. Sean C.L. Deoni et al. Magnetic Resonance in Medicine 60:1372–1387 (2008). Lead by Andrew Melbourne.
18. 17th April 2015: Ultrasonographically detectable markers of fetal chromosomal abnormalities. Nicolaides KH et al, Lancet, 340:8821, 704-707 1992. Lead by Anna David.
19. 22nd April 2015: Whole-brain, time-locked activation with simple tasks revealed using massive averaging and model-free analysis. Javier Gonzalez-Castilloa, et al. PNAS, 2012, vol. 109, no. 14, 5487–5492. Lead by Louis Lemieux.
20. 29th April 2015: Zhang HF, Maslov K, Stoica G, Wang L V. Functional photoacoustic microscopy for high-resolution and noninvasive in vivo imaging. Nat Biotechnol. 2006;24(7). See also Zhang 2007. Lead by Paul Beard.
21. 10th June 2015: Multiscale Imaging and Computational Modeling of Blood Flow in the Tumor Vasculature. Kim et al. Annals of Biomedical Engineering, Vol. 40, No. 11, November 2012 (Ó 2012) pp. 2425–2441. Lead by Rebecca Shipley.

22. 17th June 2015: Imaging adenoviral-directed reporter gene expression in living animals with positron emission tomography. Gambhir S et al, Proc. Natl. Acad. Sci. Vol. 96, pp. 2333–2338, March 1999. Lead by Tammy Kalber.
30th June 2015: Second Written Review due in.
23. 8th July 2015: Final Feedback Session.

DTP SYLLABUS 2009-2014 (ARCHIVE)

DTP Journal Club Syllabus 2013/2014

Rotation 1
1. 9th October 2013: Welcome to the DTP Journal Club.
2. 16th October 2013: No session this week.
3. 23rd October 2013: Modeling dendrite density from magnetic resonance diffusion measurements. Jespersen SN et al. Neuroimage. 2007 Feb 15;34(4):1473-86. Lead by Gary Zhang.
4. 30th October 2013: The clinical use of structural MRI in Alzheimer disease, Giovanni B. Frisoni et al, Nature Reviews Neurology 6, 67-77, February 2010. Lead by Sebastien Ourselin.
5. 6th November 2013: The Black Falcon: A Teleoperated Surgical Instrument for Minimally Invasive Surgery Akhil J. Madhani et al. Intl. Conference on Intelligent Robots and Systems 1998. Lead by Dan Stoyanov. To be held in Foster Court room 123.
7. 13th November 2013: [18F]T807, a novel tau positron emission tomography imaging agent for Alzheimer’s disease. Chun-Fang Xia, et al, Alzheimer’s & Dementia – (2013) 1–11. Lead by Erik Arstad. To be held in MPEB 1.19.
8. 20th November 2013: Magnetic resonance fingerprinting, Dan Ma et al, Nature 495, 187–192 (14 March 2013). Lead by David Atkinson.
9. 27th November 2013: Imaging brain deoxyglucose uptake and metabolism by glucoCEST MRI, Fatima A Nasrallah et al, Journal of Cerebral Blood Flow & Metabolism (2013), 1–9. Lead by Xavier Golay.
10. 4th December 2013: No session this week.
11. 11th December 2013: Nonrigid registration using free-form deformations: application to breast MR images, D. Rueckert et al, IEEE Transactions on Medical Imaging 18:8, 712-721, 1999. Lead by Dave Hawkes. To be held in MPEB 1.19.
12. 22nd January 2014: The importance of appropriate partial volume correction for PET quantification in Alzheimer’s disease. Thomas BA, et al. Eur J Nucl Med Mol Imaging 2011; 38: 1104-1119. See also the review paper. Lead by Brian Hutton. To be held in MPEB 1.19.
13. 5th February 2014 2pm: Deadline for the first written review.

Rotation 2
14. 5th February 2014. Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging, Behrens et al, Nature Neuroscience Vol 6 750-757 2003. Lead by Danny Alexander. See also Behrens 2003. To be held in MPEB 1.19.
15. 12th February 2014. First Feedback Session. To be held in MPEB 1.19.
16. 19th February 2014. Paper TBC. Chair TBC.
17. 26th February 2014. Visual assessment of the accuracy of retrospective registration of MR and CT images of the brain Fitzpatrick, J.M. et al. IEEE Transactions on Medical Imaging, 17, 4, 571-585, 1998. See also Gibson 2013. To be lead by Dean Barratt. To be held in Cruciform Foyer 101 Seminar Room 1.
18. 5th March 2014. High-field MRI of brain cortical substructure based on signal phase. Jeff H. Duyn† et al, PNAS, 104, 28, 11796–11801, 2007. See also Haacke2005 for a review of iron imaging. Lead by Karin Shmueli. To be held in MPEB 1.19.
19. 12th March 2014. Magnetic resonance imaging of perfusion using spin inversion of arterial water. Williams DS et al, Proceedings of the National Academy of Sciences of the United States of America, 89(1), 212-216, 1992. Lead by David Thomas. To be held in MPEB 1.19.
20. 19th March 2014. Stable Signal Recovery from Incomplete and Inaccurate Measurements. Candes E., Romberg J. and Tao T. Communications on Pure and Applied Mathematics, Vol. LIX, 1207–1223 (2006). Lead by Simon Arridge. See also the exercise provided here. To be held in MPEB 6.12A.
21. 1st April 2014: Group Session Ultrasonographically detectable markers of fetal chromosomal abnormalities. Nicolaides KH et al, Lancet, 340:8821, 704-707 1992. Lead by Anna David. To be held in MPEB 1.19 2-3pm. Note that this is a Tuesday!
22. 4th April. Multiscale Imaging and Computational Modeling of Blood Flow in the Tumor Vasculature. Kim et al. Annals of Biomedical Engineering, Vol. 40, No. 11, November 2012 (Ó 2012) pp. 2425–2441. To be lead by Rebecca Shipley. To be held in MPEB 1.19. Note that this is a Friday!
23. 9th April 2014: No session this week.
24. 30th April 2014: White, B.R. and Culver, J.P. (2010) Phase-encoded retinotopy as an evaluation of diffuse optical neuroimaging. NeuroImage 49, 568-577. Lead by Jem Hebden. To be held in MPEB 1.19.
25. 23rd July 2014: Final Feedback Session. To be held in MPEB 2.14.

DTP Journal Club Syllabus 2012/2013

Term 1
1. 10th October 2012: Welcome to the DTP Journal Club.
2. 17th October 2012: Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging, Behrens et al, Nature Neuroscience Vol 6 750-757 2003. Lead by Danny Alexander. See also Behrens 2003.
3. 24th October 2012: Voxel-Based Morphometry – The Methods. John Ashburner and Karl J. Friston, NeuroImage, 11, 805-821 2000. Lead by Sebastien Ourselin.
4. 31th October 2012: No session this week.
5. 7th November 2012: No session due to PhD retreat.
6. 14th November 2012: An analytical model of restricted diffusion in bovine optic nerve, Greg J. Stanisz et al, Magnetic Resonance in Medicine, Volume 37, Issue 1, pages 103–111, January 1997. Lead by Gary Zhang.
7. 21st November 2012: Brain tissue sodium concentration in multiple sclerosis: a sodium imaging study at 3 tesla. Inglese M, et al. Brain. 2010 Mar;133(Pt 3):847-57. For background see Paling et al 2011. Lead by Claudia Wheeler-Kingshott
8. 28th November 2012: A System for Video-Based Navigation for Endoscopic Endonasal Skull Base Surgery. D. J. Mirota, et al. IEEE TRANSACTIONS ON MEDICAL IMAGING, VOL. 31, NO. 4, APRIL 2012. Lead by Dan Stoyanov.
9. 5th December 2012: No session this week.
10. 12th December 2012: In vivo imaging of glucose uptake and metabolism in tumors. S. Walker-Samuel et al, Nature Medicine, 2013, In Press. Lead by Xavier Golay.

Term 2
11. 16th January 2013: SENSE: Sensitivity encoding for fast MRI, KP Pruessmann et al. MAGNETIC RESONANCE IN MEDICINE 42:5 952-962 1999. Lead by David Atkinson.
12. 23rd January 2013: The importance of appropriate partial volume correction for PET quantification in Alzheimer’s disease. Thomas BA, et al. Eur J Nucl Med Mol Imaging 2011; 38: 1104-1119. See also the review paper. Lead by Brian Hutton.
13. 30th January 2013: Learning in the Fast Lane: New Insights into Neuroplasticity. Yaniv Sagi et al, Neuron, Volume 73, Issue 6, 1195-1203, 2012. Lead by Mark Lythgoe. To be held in MPEB 1.19.
14. 6th February 2013: No session this week.
15. 13th February 2013: Feedback Session.
16. 20th February 2013: High-field MRI of brain cortical substructure based on signal phase. Jeff H. Duyn† et al, PNAS, 104, 28, 11796–11801, 2007. See also Haacke2005 for a review of iron imaging. Lead by Karin Shmueli.
17. 27th February 2013: Automatic CT-ultrasound registration for diagnostic imaging and image-guided intervention. W. Wein et al. Medical Image Analysis,Volume 12, Issue 5, October 2008, Pages 577–585. Lead by Dean Barratt.
18. 6th March 2013: Stable Signal Recovery from Incomplete and Inaccurate Measurements. Candes E., Romberg J. and Tao T. Communications on Pure and Applied Mathematics, Vol. LIX, 1207–1223 (2006). Lead by Simon Arridge. See also the exercise provided here. To be held in MPEB 1.19.
19. 14th March 2013: Ultrasonographically detectable markers of fetal chromosomal abnormalities. Nicolaides KH et al, Lancet, 340:8821, 704-707 1992. Lead by Anna David. Note exceptionally this is on a Thursday and will be held in Anatomy B15.
20. 20th March 2013: Nonrigid registration using free-form deformations: application to breast MR images, D. Rueckert et al, IEEE Transactions on Medical Imaging 18:8, 712-721, 1999. Lead by Dave Hawkes.

Term 3
21. 10th April 2013: Magnetic resonance imaging of perfusion using spin inversion of arterial water. Williams DS et al, Proceedings of the National Academy of Sciences of the United States of America, 89(1), 212-216, 1992. Lead by David Thomas.
22. 17th April 2013: Finding Stationary Subspaces in Multivariate Time Series. Paul von Bünau et al. Phys. Rev. Lett. 103, 214101 (2009). See also von Bünau 2010 and a review paper Naci 2012. Lead by Louis Lemieux.
23. 24th April 2013: White, B.R. and Culver, J.P. (2010) Phase-encoded retinotopy as an evaluation of diffuse optical neuroimaging. NeuroImage 49, 568-577. See also the adjacent supplementary material. Lead by Jem Hebden. To be held in Roberts 105b.
24. 22nd May 2013: Final Feedback Session. To be held in MPEB 2.14.

DTP Journal Club Syllabus 2011/2012

Term 1
1. 5th October 2011:ÌýWelcome to the DTP Journal Club.
2. 12th October 2011:Ìý. Lead by Danny Alexander. See also Behrens 2003.
3. 19th October 2011:Ìý. Lead by Sebastien Ourselin.
4. 26th October 2011:Ìý. Lead by Erik Arstad.
5. 2nd November 2011:Ìý. Lead by David Atkinson.ÌýTo be held in MPEB 1.19.
6. 9th November 2011:Ìý. See also Sun et al. Lead by Claudia Wheeler-Kingshott.
7. 16th November 2011:Ìý. Lead by Anna David.
8. 23rd November 2011:Ìý. Lead by Dave Hawkes.
9. 30th November 2011:ÌýÌý. Lead by Will Penny.
10. 7th December 2011:Ìý. Lead by Xavier Golay.ÌýTo be held in MPEB 1.19.
11. 14th December 2011:Ìý. Lead by David Thomas.ÌýTo be held from 12-1pm in MPEB 2.14.

Term 2
12. 11th January 2012:Ìý. Lead by David Becker.
13. 18th January 2012:ÌýNo session.
14. 25th January 2012:Ìý. Lead by Brian Hutton.
15. 1st February 2012:ÌýDeadline for first written review.
16. 8th February 2012:Ìý. Lead by Gary Zhang.
17. 15th February 2012:Ìý. Lead by Mark Lythgoe.ÌýTo be followed by first feedback session.
18. 22nd February 2012:ÌýNo session.
19. 29th February 2012:ÌýNo session.
20. 7th March 2012:Ìý. See also Zhang 2007. Lead by Paul Beard.ÌýTo be held in MPEB 1.19.
21. 14th March 2012:Ìý. Lead by Dean Barratt.ÌýTo be held in Rockefeller 339.
22. 21st March 2012:Ìý. See also the adjacent supplementary material. Lead by Jem Hebden.
23. 28th March 2012:Ìý. Lead by Nikolaus Weiskopf.

Term 3
24. 18th April 2012:Ìý. Lead by Louis Lemieux.
25. 25th April 2012:ÌýNo session.
26. 2nd May 2012:Ìý. Lead by Simon Arridge. See also the exercise provided here.
27. 9th May 2012:ÌýNo session due to ISMRM conference.
28. 16th May 2012:Ìý. Lead by Torsten Baldeweg.
29. 18th May 2012:Ìý. Lead by Shonit Punwani.ÌýNote that this is on Friday at 11am and will be held in MPEB 1.19.
30. 23rd May 2012:Ìý. See also Haacke2005 for a review of iron imaging. Lead by Karin Shmueli. *31. 6th June 2012: Provisional deadline for second written review, 5pm.
32. 20th June 2012:ÌýFinal feedback session.

DTP Journal Club Syllabus 2010/2011

Term 1 *1. 6th October 2010: Welcome to the DTP Journal Club.
2. 13th October 2010:Ìý. Lead by Xavier Golay.
3. 20th October 2010:Ìý. Lead by David Atkinson.
4. 27th October 2010:Ìý. Lead by Erik Arstad.
5. 3rd November 2010:Ìý. Lead by David Becker. To be held in MPEB 1.04.
6. 10th November 2010:Ìý. Lead by Sebastien Ourselin.
7. 17th November 2010:Ìý. Lead by Brian Hutton.
8. 24th November 2010:Ìý. Lead by Danny Alexander. See also Behrens 2003. To be held in MPEB 1.19.
9. 15th December 2010:Ìý. Lead by Dave Hawkes. To be held in MPEB 2.14.

Term 2
10. 12th January 2011:Ìý. Lead by Shonit Punwani.
11. 19th January 2011:Ìý. Lead by Nikolaus Weiskopf.
12. 2nd February 2011:ÌýFirst written review due in see brief.
13. 9th February 2011:ÌýFeedback Session.
1. 16th February 2011:Ìý. Lead by Mark Lythgoe.ÌýTo be held from 2.30pm in MPEB 2.14.
2. 23rd February 2011:Ìý. Lead by Will Penny.
3. 2nd March 2011:Ìý. See also Sun et al. Lead by Claudia Wheeler-Kingshott.ÌýTo be held in MPEB 1.19.
4. 9th March 2011:Ìý. Lead by Roger Ordidge.
5. 16th March 2011:Ìý. Lead by David Thomas.ÌýTo be held in MPEB 1.19.
6. 23rd March 2011:Ìý. Lead by Dean Barratt.
7. 30th March 2011:Ìý. Lead by Anna David.
8. 6th April 2011:Ìý. See also Logothetis 2001. Lead by Louis Lemieux.ÌýTo be held in MPEB 1.19.
9. 13th April 2011:Ìý. See also Zhang 2007. Lead by Paul Beard.

Term 3
10. 4th May 2011:Ìý. Lead by Simon Arridge.ÌýTo be held in MPEB 1.19.
11. 18th May 2011:ÌýSecond written review due in.
12. 25 May 2011:ÌýFeedback session.

DTP Journal Club Syllabus 2009/2010

Term 1
1. 7th October 2009:ÌýWelcome to the DTP Journal Club
2. 14th October 2009:Ìý. Lead by Danny Alexander. See also Behrens MRM 2003.
3. 21st October 2009:Ìý. Lead by Sebastien Ourselin. To be held in MPEB 2.14 1-2pm.
4. 28th October 2009:Ìý. Lead by Brian Hutton.
5. 4th November 2009:Ìý. Lead by Erik Arstad.
6. 11th November 2009:Ìý. Lead by David Atkinson.
7. 18th November 2009:Ìý. Lead by Simon Arridge.
8. 25th November 2009:Ìý. See also Arun IEEE-PAMI 1987. Lead by Dave Hawkes.
9. 2nd December 2009:Ìý. Lead by Roger Ordidge.
10. 9th December 2009:ÌýÌýLead by Will Penny.
11. 18th December 2009 (Friday):ÌýFirst Term Feedback Session

Term 2
1. 20th January 2010:Ìý. Lead by David Becker.
2. 27th January 2010:Ìý. Lead by Matt Hall.
3. 3rd February 2010:Ìý. Lead by Xavier Golay.
4. 10th February 2010:ÌýSession postponed until third term.
5. 17th February 2010:Ìý. Lead by David Atkinson.
6. 24th February 2010:Ìý. See also Viola 1995 and Studholme 1999. Lead by Dave Hawkes.
7. 3rd March 2010:Ìý. See also Donald 1958. Lead by Anna David. To be held in MPEB 2.14.
8. 10th March 2010:Ìý. Lead by David Thomas.

Term 3
1. 28th April 2010:Ìý. Lead by Shonit Punwani.
2. 5th May 2010:ÌýZhang, HF, Maslov, K, Stoica, G, and Wang, LV,Ìý. See also Zhang 2007. Lead by Paul Beard.
3. 12th May 2010:Ìý. Lead by Mark Lythgoe.
4. 19th May 2010:Ìý. Lead by Sebastien Ourselin.
5. 14th June 2010 (Monday):ÌýFinal Feedback Session

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